5IVT: CRYSTAL STRUCTURE OF HIV PROTEASE COMPLEXED WITH [(1S)-1-[(S)-(4- CHLOROPHENYL)-(3,5-DIFLUOROPHENYL)METHYL]-2-[[5-FLUORO-4-[2-[(2R,5S)- 5-(2,2,2-TRIFLUOROETHYLCARBAMOYLOXYMETHYL)MORPHOLIN-4-IUM-2- YL]ETHYL]PYRIDIN-1-IUM-3-YL]AMINO]-2-OXO-ETHYL]AMMONIUM
"Protease"( 93% identity ) with "BDBM50190623"( exact match ):

A Quick Jmol Tutorial

To bring up the menu: Right-click on Jmol window

Rotate molecule: Hold LeftMouse and drag

Translate molecule: Hold Ctrl-RightMouse and drag. (May not work on Macbook)

Center the view on a selected atom

  • Menu→Set Picking→Center
  • Left-click on desired central atom
  • Menu→Set Picking→Off

Change from Cartoon rendering of protein to "licorice bond" rendering

  • Menu→Select→Protein→All
  • Menu→Style→Bonds→0.2 Å
  • Menu→Style→Structures→Off

Change from "licorice bond" rendering of ligand to van der Waals rendering

  • Menu→Select→Hetero→Ligand
  • Menu→Style→Atoms→100% van der Waals

Save image of current view

  • Menu→Save→PNG image

To learn more about Jmol, see http://www.jmol.org, http://wiki.jmol.org.